Microsatellite markers for the dinoflagellate Gambierdiscus caribaeus from high-throughput sequencing data

Ingrid Sassenhagen, Deana L. Erdner (University of Texas at Austin, USA)

(Artículo original)

Abstract: Members of the benthic dinoflagellate genus Gambierdiscus are the causative agents of ciguatera fish poisoning worldwide. Ciguatera outbreaks appear to be more common in recent years and new incidences are reported from unprecedented regions. To investigate Gambierdicus population dynamics, connectivity, and dispersal routes, we developed microsatellite markers for Gambierdiscus caribaeus, a globally distributed species that is common at our study site at St. Thomas in the US Virgin Islands. We used high-throughput partial genome sequencing along with an existing transcriptome for microsatellite discovery. Screening of contigs with less than three times coverage resulted in 558 (partial genome) and 33 (transcriptome) candidate microsatellites. Four primer pairs from the partial genome and three from the transcriptome successfully amplified polymorphic microsatellites in multiplexed PCR reactions. The seven markers were tested on 150 G. caribaeus strains isolated monthly from August 2013 to July 2015 at St. Thomas, USVI. The numbers of alleles per locus varied between 3 and 14, and the allele diversity ranged from 0.214 to 0.899 in this dataset. These newly developed microsatellites will enable studies of population structure, connectivity, and dispersal in G. caribaeus and can give new insights into the expansion of ciguatera outbreaks worldwide.

Keywords: Caribbean, dinoflagellate, Gambierdiscus, microsatellites, population genetics

https://www.diva-portal.org/smash/get/diva2:1391744/FULLTEXT01.pdf

 

Compartir...
Publicado en Ciguatera.

Licenciada en Información Científico Técnica y Master en Bibliotecología y Ciencias de la Información, por la Universidad de La Habana, Cuba. Ha estado vinculada durante más de 25 años al área de las Ciencias de la Información y desde el 2015 labora como Especialista Principal en el Centro de Documentación e Información del Centro de Investigaciones Pesqueras (CIP) de Cuba.

Un comentario

Deja una respuesta

Tu dirección de correo electrónico no será publicada.